Crops in silico

Contents:

• Overview
  • Model integration framework: cis_interface
  • Model composer and execution framework
  • Model catalog
• Getting started
  • Logging in
  • Starting JupyterLab
  • Launching the Model Composer
  • Loading an Existing Model Graph
  • Executing the Graph
  • Viewing Execution Output
  • Using the Model Library
  • Next step
• User Guide
  • Table of Contents
  • Orientation
  • Canvas Controls
  • Loading an Example Graph
  • Adding a Node
  • Adding an Edge
  • Adding an InPort / OutPort
  • Right-Click Context Menu
  • Logging In
  • Saving a Composed Graph
  • Creating a New Model
  • Official Submission
• Developer’s Guide
  • Running the Crops in silico Platform
  • Running Under Kubernetes (Production-Ready)
  • Running Under Docker (Development Only)
  • Running Without Containers (Not recommended)
  • Girder Configuration
  • Adjusting the Server Root
  • Enabling OAuth
  • Enabling cis-girder-plugin
  • Crops in silico Development Environment
  • Prerequisites
  • Build
  • Run
  • Develop
• Administrator’s Guide
  • Jetstream
  • Kubernetes
  • JupyterHub
  • JupyterLab
  • MATLAB support
  • Dockerhub
  • Github
  • Sphinx
  • VM Setup

Indices and tables

• Index
• Module Index
• Search Page